• Barillé L, Le Bris A, Goulletquer P, Thomas Y, Glize P, Kane F, Falconer L, Guillotreau P, Trouillet B, Palmer S & Gernez P (2020). Biological, socio-economic, and administrative opportunities and challenges to moving aquaculture offshore for small French oyster-farming companies. Aquaculture, 735045. PDF
  • Barnett A, Méléder V, Dupuy C, & Lavaud J (2020). The vertical migratory rhythm of intertidal microphytobenthos in sediment depends on the light photoperiod, intensity and spectrum: evidence for a positive effect of blue wavelengths. Front. Mar. Sci. 7:212. PDF
  • Cruz S, LeKieffre C, Cartaxana P, Hubas C, Thiney N, Jakobsen S, Escrig S, Jesus B, Kühl M, Calado R & Meibom A (2020). Functional kleptoplasts intermediate incorporation of carbon and nitrogen in cells of the Sacoglossa sea slug Elysia viridisSci Rep 10, 10548. PDF
  • David, V., Tortajada, S., Philippine, O., Bréret, M., Barnett, A., Agogué, H., ... & Dupuy, C. (2019). Ecological succession and resilience of plankton recovering from an acute disturbance in freshwater marshes. Science of The Total Environment, 135997. PDF
  • Palmer S., Gernez P., Thomas Y., Simis S., Miller P., Glize P., & Barillé L. (2019) Remote Sensing-Driven Pacific Oyster (Crassostrea gigas) Growth Modeling to Inform Offshore Aquaculture Site Selection. Front. Mar. Sci. 6:802. doi: 10.3389/fmars.2019.00802 PDF
  • Prins A, Deleris P, Hubas C, & Jesus B (2020) Effect of Light Intensity and Light Quality on Diatom Behavioral and Physiological Photoprotection. Front. Mar. Sci. 7:203. doi: 10.3389/fmars.2020.0020. PDF
  • Ribeiro L, Brotas V, Hernández-Fariñas T, Jesus B & Barillé L (2020). Assessing alternative microscopy-based approaches to species abundance description of intertidal diatom communities. Front. Mar. Sci. 7:36. PDF
  • Verpoorter C, Menuge B, Launeau P, Méléder V, Héquette A, Cartier A, & Sipka, V (2020). Synergy Between Hyperspectral (HYSPEX), Multispectral (SPOT 6/7, Sentinel-.2) Remotely Sensed Data and LiDAR Data for Mapping the Authie Estuary (France). In Estuaries and Coastal Zones in Times of Global Change (pp. 769-788). Springer, Singapore. PDF


  • Ameryoun, H., Schoefs, F., Barillé, L., & Thomas, Y. (2019). Stochastic modeling of forces on jacket-type offshore structures colonized by marine growth. Journal of Marine Science and Engineering, 7, 158. PDF
  • Androuin, T., Dubois, S.F., Decottignies, P., Pelleter, E., Carlier, A., 2019. The dark side of soft tissues: Unexpected inorganic carbonate in the invasive slipper limpet Crepidula fornicata and its implications for stable isotope interpretations. Rapid Communications in Mass Spectrometry 33: 107-115 PDF
  • Beninger, P. G., & Chérel, D. (2019). Cloaked bivalve oocytes: lessons in evolution, ecology, and scientific awareness. Ecology, e02818. PDF
  • Bonnanfant, M., Jesus, B., Pruvost, J., Mouget, J.-L., Campbell, D. A. (2019) Photosynthetic electron transport transients in Chlorella vulgaris under fluctuating light. Algal Research, 44: 101713. PDF
  • Cartaxana, P., Morelli, L., Jesus, B., Calado, G., Calado, R., Cruz, S. (2019) The photon menace: kleptoplast protection in the photosynthetic sea slug Elysia timida. Journal of Experimental Biology 222: jeb202580 doi: 10.1242/jeb.202580
  • Castilla‐Gavilán, M., Cognie, B., Ragueneau, E., Turpin, V., Decottignies, P. (2019). Evaluation of dried macrophytes as an alternative diet for the rearing of the sea urchin Paracentrotus lividus (Lamarck, 1816). Aquaculture Res., 50: 1762–1769. PDF
  • Cointet, E., Wielgosz-Collin, G., Méléder, V., & Gonçalves, O. (2019a). Lipids in benthic diatoms: A new suitable screening procedure. Algal Research, 39, 101425. PDF
  • Cointet, E., Wielgosz-Collin, G., Bougaran, G., Rabesaotra, V., Goncalves, O., & Meleder, V. (2019b). Effects of light and nitrogen availability on photosynthetic efficiency and fatty acid content of three original benthic diatom strains. PloS one, 14 PDF
  • Jauffrais, T., LeKieffre, C., Schweizer, M., Geslin, E., Metzger, E., Bernhard, J. M., Jesus, B., Filipsson, H. L., Maire, O., and Meibom, A. (2019a). Kleptoplastidic benthic foraminifera from aphotic habitats: insights into assimilation of inorganic C, N and S studied with sub‐cellular resolution. Environmental microbiology, 21: 125-141. PDF
  • Jauffrais, T., LeKieffre, C., Schweizer, M., Jesus, B., Metzger, E., and Geslin, E. (2019b). Response of a kleptoplastidic foraminifer to heterotrophic starvation: photosynthesis and lipid droplet biogenesis. FEMS Microbiology Ecology, 95, fiz046.
  • Lebreton, B., Rivaud, A., Picot, L., Prévost, B., Barillé, L., Sauzeau, T., ... & Lavaud, J. (2019). From ecological relevance of the ecosystem services concept to its socio-political use. The case study of intertidal bare mudflats in the Marennes-Oléron Bay, France. Ocean & Coastal Management, 172: 41-54. PDF
  • Nghiem Xuan R., Safitri I., Mouget J.L., Pruvost J., Turpin V. and Jaouen P. (2019) Design of an artificial culture medium to optimize Haslea ostrearia biomass and marennine production. Algal Research, 45, 101653 PDF
  • Prasetiya, F.S., Decottignies, P., Tremblay, R., Mouget, J-L., & Cognie, B. (2019). Does culture supernatant of Haslea ostrearia containing marennine affect short-term physiological traits in the adult blue mussel Mytilus edulis? Aquaculture Reports 15 PDF
  • Poulin, M., Méléder, V. & Mouget J.L (2019). Typification of the first recognized blue pigmented diatom, Haslea ostrearia (Bacillariophyceae). Plant Ecology and Evolution, 152, 402-408. PDF
  • Ratmaya, W., Soudant, D., Salmon-Monviola, J., Plus, M., Cochennec-Laureau, N., Goubert, E., ..., Barillé, L., & Souchu, P. (2019). Reduced phosphorus loads from the Loire and Vilaine rivers were accompanied by increasing eutrophication in the Vilaine Bay (south Brittany, France). Biogeosciences, 16: 1361-1380. PDF
  • Revel, M., Lagarde, F., Perrein-Ettajani, H., Bruneau, M., Akcha, F., Sussarellu, R., Rouxel, J., Costil, K., Decottignies, P., Cognie, B., Châtel, A., Mouneyrac, C., 2019. Tissue-specific biomarker responses in the blue mussel Mytilus spp. exposed to a mixture of microplastics at environmentally relevant concentrations. Frontiers in Environmental Science 7: 1-14 PDF
  • Savelli R., Bertin X., Orvain F., Gernez P., ... & Le Fouest V (2019). Impact of chronic and massive resuspension mechanisms on the microphytobenthos dynamics in a temperate intertidal mudflat. Journal of Geophysical Research: Biogeosciences. doi: 10.1029/2019JG005369 PDF
  • Stramski D., Reynolds R. A., Gernez P., Röttgers R., and Wurl O. (2019). Inherent optical properties and particle characteristics of the sea-surface microlayer. Progress in Oceanography, 176:102117. PDF


  • Androuin, T., Polerecky, L., Decottignies, P., Dubois, S.F., Dupuy, C., Hubas, C., Jesus, B., Le Gall, E., Marzloff, M.P. and Carlier, A. (2018) Subtidal Microphytobenthos: A Secret Garden Stimulated by the Engineer Species Crepidula fornicata. Frontiers in Marine Sciences  PDF
  • Castilla-Gavilán, M., Buzin, F., Cognie, B., Dumay, J., Turpin, V., & Decottignies, P. (2018a). Optimising microalgae diets in sea urchin Paracentrotus lividus larviculture to promote aquaculture diversification. Aquaculture, 490: 251-259. PDF
  • Castilla-Gavilán, M., Turpin, V., Buzin, F., Cognie, B., Decottignies, P. (2018b). Optimizing metamorphosis in Paracentrotus lividus aquaculture using alternative macroalgae species to Corallina sp. Aquaculture International, 26: 1511–1518. PDF
  • Echappé, C., Gernez, P., Méléder, V., Jesus, B., Cognie, B., Decottignies, P., Sabbe, K. & Barillé, L. (2018). Satellite remote sensing reveals a positive impact of living oyster reefs on microalgal biofilm development. Biogeosciences, 15: 905-918 PDF
  • Larnicol, M., Launeau, P., & Gernez, P. (2018). Using high-resolution airborne data to evaluate MERIS atmospheric correction and intra-pixel Variability in nearshore turbid waters. Remote Sensing, 10: 274. PDF
  • Launeau, P., Méléder, V., Verpoorter, C., Barillé, L., Kazemipour-Ricci, F., Giraud, M., ... & Le Menn, E. (2018). Microphytobenthos biomass and diversity mapping at different spatial scales with a hyperspectral optical model. Remote Sensing, 10: 716. PDF
  • LeKieffre, C., Jauffrais, T., Geslin, E., Jesus, B., Bernhard, J.M., Giovani, M.E., Meibom, A. (2018) Inorganic carbon and nitrogen assimilation in cellular compartments of a benthic kleptoplastic foraminifer. Scientific Reports, doi:10.1038/s41598-018-28455-1. PDF
  • Majdi, N., Hette-Tronquart, N., Auclair, E., Bec, A., Chouvelon, T., Cognie, B., Danger, M., Decottignies, P., Dessier, A., Desvilettes, C., Dubois, S., Dupuy, C., Fritsch, C., Gaucherel, C., Hedde, M., Jabot, F., Lefebvre, S., Marzloff, M.P., Pey, B., Peyrard, N., Powolny, T., Sabbadin, R., Thébault, E., Perga, M.-E., 2018. There's no harm in having too much: A comprehensive toolbox of methods in trophic ecology. Foods webs 16: 1-18 PDF
  • Méléder, V., Jesus, B., Barnett, A., Barillé, L., & Lavaud, J. (2018). Microphytobenthos primary production estimated by hyperspectral reflectance. PloS one, 13: e0197093. PDF
  • Pernet F., Fuhrmann M., Petton B., Mazurié J., Bouget JF., Fleury E., Daigle G., & Gernez P. (2018). Determination of risk factors for herpesvirus outbreak in oysters using a broad-scale spatial epidemiology framework. Scientific Reports, 8: 10869 PDF
  • Savelli R., Dupuy C., Barillé L., Lerouxel A., Guizien K., Philippe A., Bocher P., Polsenaere P., Le Fouest V. (2018). On biotic and abiotic drivers of the microphytobenthos seasonal cycle in a temperate intertidal mudflat: a modelling study. Biogeosciences, 15, 7243-7271. PDF
  • Soissons L., Haanstra E., van Katwijk M., Asmus R., Auby I., Barillé L., Brun F., Cardoso P., Desroy N., Fournier J. , Ganthy F., Garmendia J-M., Godet L., Grilo T., Kadel P., Ondiviela B., Peralta G., Puente A., Recio M., Rigouin L., Valle M., Herman P., Bouma T. , 2018. Latitudinal patterns in European seagrass carbon reserves: influence of seasonal fluctuations versus short-term stress and disturbance events. Frontiers in Plant Science, doi:10.3389/fpls.2018.00088 PDF
  • Thomas Y., Cassou C., Gernez P., & Pouvreau S. (2018). Oysters as sentinels of climate variability and climate change in coastal ecosystems. Environmental Research Letters, 13: 104009 PDF
  • Zoffoli, M. L., Lee, Z., & Marra, J. F. (2018). Regionalization and dynamic parameterization of quantum yield of photosynthesis to improve the ocean primary production estimates from remote sensing. Frontiers in Marine Science, 5, 446. PDF
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  • Barillé, L., Le Bris, A., Méléder, V., Launeau, P., Robin, M., Louvrou, I., & Ribeiro, L. (2017). Photosynthetic epibionts and endobionts of Pacific oyster shells from oyster reefs in rocky versus mudflat shores. PloS one, 12: e0185187. PDF
  • Chérel, D., & Beninger, P. G. (2017). Oocyte atresia characteristics and effect on reproductive effort of Manila Clam Tapes philippinarum (Adams and Reeve, 1850). Journal of Shellfish Research, 36: 549-558. PDF
  • Dutertre, M., Ernande, B., Haure, J., & Barillé, L. (2017). Spatial and temporal adjustments in gill and palp size in the oyster Crassostrea gigas. Journal of Molluscan Studies, 83: 11-18. PDF
  • Hernández Fariñas, T., Ribeiro, L., Soudant, D., Belin, C., Lampert, L., & Barillé, L. (2017). Contribution of benthic microalgae to the temporal variation in phytoplankton assemblages in a macrotidal system. Journal of phycology, 53:1020-1034 PDF
  • Gernez, P., Doxaran, D., & Barillé, L. (2017). Shellfish aquaculture from space: potential of Sentinel2 to monitor tide-driven changes in turbidity, chlorophyll concentration and oyster physiological response at the scale of an oyster farm. Frontiers in Marine Science, 4, 137, doi: 10.3389/fmars.2017.00137 PDF
  • Hubas, C., Boeuf, D., Jesus, B., Thiney, N., Bozec, Y., & Jeanthon, C. (2017). A nanoscale study of carbon and nitrogen fluxes in mats of purple sulfur bacteria: implications for carbon cycling at the surface of coastal sediments. Frontiers in microbiology, 8: 1995. PDF
  • Jauffrais, T., Jesus, B., Méléder, V., & Geslin, E. (2017). Functional xanthophyll cycle and pigment content of a kleptoplastic benthic foraminifer: Haynesina germanica. PloS one, 12: e0172678. PDF
  • Kandilian, R., Jesus, B., Legrand, J., Pilon, L., & Pruvost, J. (2017). Light transfer in agar immobilized microalgae cell cultures. Journal of Quantitative Spectroscopy and Radiative Transfer, 198: 81-92. PDF
  • Novoa, S., Doxaran, D., Ody, A., Vanhellemont, Q., Lafon, V., Lubac, B., & Gernez, P. (2017). Atmospheric corrections and multi-conditional algorithm for multi-sensor remote sensing of suspended particulate matter in low-to-high turbidity levels coastal waters. Remote Sensing, 9: 61. PDF
  • Prasetiya, F. S., Decottignies, P., Barillé, L., Gastineau, R., Jacquette, B., Figiel, A., ... & Cognie, B. (2017). Cell size-based, passive selection of the blue diatom Haslea ostrearia by the oyster Crassostrea gigas. Journal of Molluscan Studies, 83: 145-152. PDF
  • Prasetiya, F. S., Comeau, L. A., Gastineau, R., Decottignies, P., Cognie, B., Morançais, M., ... & Tremblay, R. (2017). Effect of marennine produced by the blue diatom Haslea ostrearia on behavioral, physiological and biochemical traits of juvenile Mytilus edulis and Crassostrea virginica. Aquaculture, 467, 138-148. PDF
  • Soissons, L. M., Van Katwijk, M. M., Peralta, G., Brun, F. G., Cardoso, P. G., Grilo, T. F., ... & Ganthy, F. (2018). Seasonal and latitudinal variation in seagrass mechanical traits across Europe: The influence of local nutrient status and morphometric plasticity. Limnology and Oceanography, 63: 37-46. PDF
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